MOMD:
Mouse Oral Microbiome Database
Home
Taxonomy
Genomics
Tools
16S rRNA Gene Idnetification
BLAST Search Genomes
Download
Publication
MOMD Genome Explorer
Selected genome:
Lactobacillus johnsonii
19428wE2_CC3
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
Genome Viewer
PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
Quick search
:
Match all words
Match any words
Match exact phrase
Partially
In whole field
(leave empty to show all)
PROKKA Genome Annotation:
contigs: 101
bases: 1,925,316 bps
CDS: 1,771
rRNA: 9
Repeat region:
tmRNA: 1
tRNA: 60
misc RNA:
Total features: 1,841
Total number of protein coding genes annotated/found:
1,771
Display
20
50
100
All items per page
Items 1 - 20
🡆
click arrow to navigate by page or
of 89 pages
Molecule ^
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range
Gene Product Name
SEQF5026|JADGKX010000001.1
SEQF5026_00764
Genome Viewer
NA
AA
651/217
191768-191118
ISL3 family transposase ISLjo2
SEQF5026|JADGKX010000001.1
SEQF5026_00762
Genome Viewer
NA
AA
708/236
190813-190106
Transcriptional regulatory protein WalR
SEQF5026|JADGKX010000001.1
SEQF5026_00761
Genome Viewer
NA
AA
1794/598
190002-188209
Sensor histidine kinase WalK
SEQF5026|JADGKX010000001.1
SEQF5026_00760
Genome Viewer
NA
AA
1329/443
188219-186891
hypothetical protein
SEQF5026|JADGKX010000001.1
SEQF5026_00759
Genome Viewer
NA
AA
822/274
186901-186080
hypothetical protein
SEQF5026|JADGKX010000001.1
SEQF5026_00758
Genome Viewer
NA
AA
798/266
186074-185277
Putative metallo-hydrolase YycJ
SEQF5026|JADGKX010000001.1
SEQF5026_00757
Genome Viewer
NA
AA
1221/407
185193-183973
Serine protease Do-like HtrA
SEQF5026|JADGKX010000001.1
SEQF5026_00756
Genome Viewer
NA
AA
480/160
183462-182983
Ribosomal RNA large subunit methyltransferase H
SEQF5026|JADGKX010000001.1
SEQF5026_00755
Genome Viewer
NA
AA
654/218
182329-182982
hypothetical protein
SEQF5026|JADGKX010000001.1
SEQF5026_00754
Genome Viewer
NA
AA
1347/449
180971-182317
Putative HMP/thiamine import ATP-binding protein YkoD
SEQF5026|JADGKX010000001.1
SEQF5026_00753
Genome Viewer
NA
AA
564/188
180433-180996
Putative HMP/thiamine permease protein YkoE
SEQF5026|JADGKX010000001.1
SEQF5026_00752
Genome Viewer
NA
AA
927/309
180196-179270
HTH-type transcriptional activator RhaS
SEQF5026|JADGKX010000001.1
SEQF5026_00751
Genome Viewer
NA
AA
891/297
178345-179235
Protease HtpX
SEQF5026|JADGKX010000001.1
SEQF5026_00750
Genome Viewer
NA
AA
558/186
177779-178336
Protein LemA
SEQF5026|JADGKX010000002.1
SEQF5026_01120
Genome Viewer
NA
AA
849/283
176837-177685
HTH-type transcriptional regulator BenM
SEQF5026|JADGKX010000002.1
SEQF5026_01119
Genome Viewer
NA
AA
2268/756
176713-174446
Potassium-transporting ATPase ATP-binding subunit
SEQF5026|JADGKX010000001.1
SEQF5026_00749
Genome Viewer
NA
AA
1107/369
176557-177663
Inner membrane protein YbiR
SEQF5026|JADGKX010000001.1
SEQF5026_00748
Genome Viewer
NA
AA
411/137
176381-175971
hypothetical protein
SEQF5026|JADGKX010000001.1
SEQF5026_00747
Genome Viewer
NA
AA
141/47
175892-175752
hypothetical protein
SEQF5026|JADGKX010000001.1
SEQF5026_00746
Genome Viewer
NA
AA
861/287
175576-174716
hypothetical protein
Items 1 - 20
🡆
click arrow to navigate by page or
of 89 pages
Genome Viewer
JBrowse Genome Viewer
* Click GI, UID, Gene Product to go to NCBI record
^ Click column names to toggle sorting
Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
Powered by
